RNA-seq of whole tissue of 3 days post fertilization atp6v1e1b-deficient zebrafish larvae and wild-type controls
RNA-Seq mRNA differential
Organism:
Danio rerio
Publications
- Van Damme T, Gardeitchik T, Mohamed M, Guerrero-Castillo S, Freisinger P et al. (2017) Mutations in ATP6V1E1 or ATP6V1A Cause Autosomal-Recessive Cutis Laxa.
- Wang L, Wang S, Li W. (2012) RSeQC: quality control of RNA-seq experiments.
- Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C et al. (2013) STAR: ultrafast universal RNA-seq aligner.
- Liao Y, Smyth GK, Shi W. (2014) featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
- Ewels P, Magnusson M, Lundin S, Käller M. (2016) MultiQC: summarize analysis results for multiple tools and samples in a single report.
- Luo W, Friedman MS, Shedden K, Hankenson KD, Woolf PJ. et al. (2009) GAGE: generally applicable gene set enrichment for pathway analysis.
- Love MI, Huber W, Anders S. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
- Federico A, Karagiannis T, Karri K, Kishore D, Koga Y et al. (2019) Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines.