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Cellular Phenotype Database


Measurements for AMBN10040887

Screen:
C1_SyM_1 (Primary)
Study:
Reagent:
Gene mapped:
Screen scoring method:
Each well subjected to a dsRNA (or reagent) perturbation is summarized by a vector (or phenotypic profile) of 13 numerical descriptors. The 13 numerical descriptors are: number of cells, median cell size, median cell eccentricity, median actin to tubulin int. ratio, median nucleus size, median nucleus intensity, median nucleus to cell size ratio, fraction of actin fiber cells, fraction of big Cells, fraction of condensed cells, fraction of metaphase cells, fraction of lamellipodia cells and fraction of cells with protrusions). Numerical descriptors range from +AC0-1 (very low), 0 (normal) to 1 (very high) and a phenotype can be a combination of different numerical descriptors. For each reagent, we list the numerical descriptor(s) and the associated score(s) that contributed to assigning a reagent/gene to a specific phenotypic class.
Replicas:
Phenotypes af ato bc c ecc ext la m n nex nin nto p
Parameters/Rules:
fraction of actin fiber cellsaf
median actin to tubulin int. ratioato
fraction of big cellsbc
fraction of condensed cellsc
median cell eccentricityecc
median cell sizeext
fraction of lamellipodia cellsla
fraction of metaphase cellsm
number of cellsn
median nucleus sizenex
median nucleus intensitynin
median nucleus to cell size rationto
fraction of cells with protrusionsp

— phenotypes are defined directly in the study's spreadsheet