Services
Research
Training
Industry
About us
Cellular Phenotype Database
Home
Phenotypes browsing
Ontology terms browsing
About the Project
Gene
Reagent ID
Gene attribute
Phenotype
Study
Fruit Fly
Homo sapiens
Ontology terms
Any study terms
BZH_SH4-mCherry-GFP
CellMorph
CGSR DNA damage
EMBL-secretion screen
GFP-RNF168
JCB Metazoan actinome
Mitocheck
NF-kB oscillation screen
PP2A-B55α
Phagokinetic track
(
?
)
Search by «Ontology term» provides results for ontology terms through the studies having common genes knocked down.
Search by «Any study term» provides results for phenotype terms through the studies having common genes knocked down.
Search by study acronim provides results for phenotype terms observed
together
for a given reagent/gene
e.g.
AURKC
or
ENSG00000105146
e.g.
124936
CMPO off:
e.g. kinesin complex
e.g. plasma membrane
Reagent summary
Reagent information:
CellPh DB internal ID:
AMBN10026965
Supplier:
Ambion, Silencer Pre-designed siRNA
Supplier reagent ID:
122989
Sequence:
GGUUGCAUGAUGUGAGGGATT GTCCAACGUACUACACUCCCU
Target gene:
TRNAU1AP
Ensembl ID:
ENSG00000180098
Gene Ontology:
show
Gene Ontology:
×
ENST00000373830:
cytoplasm, nucleic acid binding, nucleotide binding, nucleus, poly(A) RNA binding, protein binding, selenocysteine incorporation
Transcript Hit/Total transcripts: (
?
)
This ratio represents the number of transcripts of the target gene that are mapped by the reagent over the total number of transcripts produced by the target gene
4 / 10
Match:
exact
Phenotypes observed:
Observed phenotypes
(
?
):
These terms represent the phenotypic classes observed following the suppression of the expression of the selected gene across independent screens
Assigned ontology terms
(
?
):
These terms represent the cellular phenotype ontology terms assigned to the observed phenotypes
Evidence
Screen
In set
*)
Intracellular retention of SH4(HASPB)-GFP
Decreased rate of intracellular protein transport
0.5
B1_SyM_1
phenotype view:
2814 / 3669
ontology view:
2814 / 3669
*) Number of gene/reagents with the same phenotype(s) (unique mapping)
Alignment information:
Mapping to transcripts of TRNAU1AP:
•
for coding transcript, and
°
for non-coding transcript
regions of reagent's mapping to
exons
are coloured with
dark blue
and indicated with
red
