IHECRE00000228.4 LIVE IHEC harmonized v2.0 JSON
| Species | Homo sapiens |
| Type | Pooled samples |
| Status | Complete |
| Project | CEEHRC |
| Description | Primary Cell from Normal Mammary gland-Breast from donor ID: CEMT_35-38_pool (pooled sample from multiple donors) (age Mixed, Female, cell type:Stromal cells, Mammary gland-Breast with disease_status: NA) from Aparicio/Eaves Lab |
| Previous versions | IHECRE00000228.3 IHECRE00000228.2 IHECRE00000228.1 |
Metadata
| Biomaterial type | primary cell |
| Cell type | stromal cell |
| Cell markers | DAPI- CD45- CD31- CD49f- EpCAM- |
| Biospecimen | |
| Broad label | connective tissue cell |
| Intermediate label | connective tissue cell |
| Curated label | Breast Fibroblast |
| Ontology curie | CL:0000499 |
| Biospecimen disease | |
| Broad label | Healthy/None |
| Ontology curie | NCIM:C0549184 |
| Donor | |
| Type | Pooled samples |
| ID | CEMT_35-38_pool |
| Age | unknown |
| Age unit | unknown |
| Life stage | adult |
| Sex | female |
| Health status | Disease type AND/OR category unknown |
| Health status ontology curie | NCIM:C0277545 |
Experimental data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001272559 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001207321 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001207322 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001207323 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001207324 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001207325 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001207326 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001207327 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001248563 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001248526 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |