IHECRE00000227.3 PREVIOUS JSON
| Species | Homo sapiens |
| Type | Single donor |
| Status | Complete |
| Project | CEEHRC |
| Description | Cell Line:184-hTert-L2 (CEMT_9, Mammary gland-Breast ) |
| Live version | IHECRE00000227.4 |
| Previous versions | IHECRE00000227.2 IHECRE00000227.1 |
Metadata
| Biomaterial type | Cell Line |
| Disease ontology uri | https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=C0549184 |
| Differentiation stage | NA |
| Passage | 12 |
| Differentiation method | NA |
| Subject id | CEMT0009 |
| Medium | Growth media: MEBM+MEGM (supplements and growth factors, note: GA1000 also included as part of the supplements was NOT used in the growth media) all from LONZA |
| Gender | female |
| Line | 184-hTert-L2 |
| Taxon id | 9606 |
| Sample ontology uri | https://www.ebi.ac.uk/ols/ontologies/efo/terms?short_form=EFO_0002884 |
| Disease | None |
| Sex | Female |
| Lineage | Normal mammary epithelial cell line. L2 and L9 are two clones selected from the original 184-hTERT line, which was a mixed population. 184-hTERTs are predisposed to gain chromosome 20 upon continued passage in culture. The L2 clone gains chromosome 20 much more rapidly than L9 or other clones that have been examined. |
| Batch | 1 |
| Phenotype | https://www.ebi.ac.uk/ols/ontologies/efo/terms?short_form=EFO_0002884 |
| Ihec reference epigenome identifier | CEMT0009 |
| Biomaterial provider | Aparicio |
Experimental data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| WGS | WGS | EGA | EGAX00001174995 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001172085 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001172090 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001172091 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001172088 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001172089 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001172086 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001172087 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001178275 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001172103 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001169505 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |