IHECRE00000221.3 PREVIOUS JSON
| Species | Homo sapiens |
| Type | Single donor |
| Status | Complete |
| Project | CEEHRC |
| Description | Primary Tissue from Diseased Brain from donor ID: SM2582 (age Unknown, Female, Diseased Brain sample with donor health condition: Brain Glioblastoma Multiforme) from Cairncross Lab |
| Live version | IHECRE00000221.4 |
| Previous versions | IHECRE00000221.2 IHECRE00000221.1 |
Metadata
| Biomaterial type | Primary Tissue |
| Disease ontology uri | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0017636 |
| Donor id | SM2582 |
| Donor life stage | adult |
| Donor ethnicity | Unknown |
| Donor sex | Female |
| Gender | female |
| Tissue type | Brain |
| Donor age unit | year |
| Taxon id | 9606 |
| Sample ontology uri | http://purl.obolibrary.org/obo/UBERON_0000955 |
| Disease | Brain Glioblastoma Multiforme |
| Donor age | NA |
| Donor health status ontology uri | http://ncimeta.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20MetaThesaurus&code=C0017636 |
| Collection method | Snap frozen |
| Phenotype | http://purl.obolibrary.org/obo/UBERON_0000955 |
| Ihec reference epigenome identifier | CEMT0023 |
| Sample id | CEMT0023 |
| Tissue depot | Brain |
| Donor health status | Brain Glioblastoma Multiforme |
| Biomaterial provider | Cairncross Lab |
Experimental data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| WGS | WGS | EGA | EGAX00001248532 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001258395 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001258403 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001258394 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001258402 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001255608 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001255612 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001255611 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001255610 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001255609 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001272563 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001248548 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001248511 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |