IHECRE00000001.4 PREVIOUS JSON
| Species | Homo sapiens |
| Type | Single donor |
| Status | Complete |
| Project | CEEHRC |
| Description | Cell Line:MCF10A (Mammary gland-Breast Fibrocystic Disease) |
| Live version | IHECRE00000001.5 |
| Previous versions | IHECRE00000001.3 IHECRE00000001.2 IHECRE00000001.1 |
Metadata
| Biomaterial type | Cell Line |
| Disease ontology uri | https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=C0678222 |
| Differentiation stage | NA |
| Passage | 3 |
| Differentiation method | NA |
| Subject id | CEMT0007 |
| Medium | Growth media: DMEM/F12 +5% horse serum (it also includes FGF (20 ug/ml), Hydrocortizone (0.5 mg/ml), Cholera Toxin (10 ug/ml), insulin (1 mg/ml), Pen/Strep 1%) |
| Gender | female |
| Line | MCF10A |
| Taxon id | 9606 |
| Sample ontology uri | https://www.ebi.ac.uk/ols/ontologies/efo/terms?short_form=EFO_0001200 |
| Disease | Mammary gland-Breast Fibrocystic Disease |
| Sex | Female |
| Lineage | mammary gland epithelia |
| Batch | 1 |
| Phenotype | https://www.ebi.ac.uk/ols/ontologies/efo/terms?short_form=EFO_0001200 |
| Ihec reference epigenome identifier | CEMT0007 |
| Biomaterial provider | Aparicio |
Experimental data
| Assay Type | Experiment Type | Archive | Primary ID | Secondary ID | URL |
|---|---|---|---|---|---|
| WGS | WGS | EGA | EGAX00001174992 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me1 | EGA | EGAX00001172096 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27me3 | EGA | EGAX00001172095 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K36me3 | EGA | EGAX00001172094 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K27ac | EGA | EGAX00001172092 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | ChIP-Seq Input | EGA | EGAX00001172093 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K4me3 | EGA | EGAX00001172098 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| ChIP-Seq | Histone H3K9me3 | EGA | EGAX00001172097 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| Bisulfite-Seq | DNA Methylation | EGA | EGAX00001178273 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| RNA-Seq | mRNA-Seq | EGA | EGAX00001172105 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |
| miRNA-Seq | smRNA-Seq | EGA | EGAX00001169503 | EGAD00001003963 | https://ega-archive.org/datasets/EGAD00001003963 |