E-TABM-722 - ChIP-seq of Canis familiaris, Gallus gallus, Mus musculus, Homo sapiens, Monodelphis domestica to investigate CEBPA and HNF4a binding in five vertebrates

Status
Released on 8 April 2010, last updated on 2 May 2014
Organism
Canis familiaris, Gallus gallus, Homo sapiens, Monodelphis domestica, Mus musculus
Samples (22)
Protocols (5)
Description
Five-vertebrate ChIP-seq reveals the evolutionary dynamics of trancription factor binding. The SRF files for this experiment can be found in the European Read Archive with study accession number ERP000054. The fastq files can be found in the raw archives and for some assays links to the ENA runs and ENA fastq files are provided.
Experiment types
ChIP-seq, binding site identification design, species design
Contact
Citations
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding. Schmidt, Dominic; Wilson, Michael D.; Ballester, Benoit; Schwalie, Petra C.; Brown, Gordon D.; Marshall, Aileen; Kutter, Claudia; Watt, Stephen; Martinez-Jimenez, Celia P.; Mackay, Sarah; Talianidis, Iannis; Flicek, Paul; Odom, Duncan T. , PMID:20378774
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-TABM-722.idf.txt
Sample and data relationshipE-TABM-722.sdrf.txt
Raw data (43)Click to browse raw data
Links