E-TABM-157 - Transcription profiling of 51 human breast cancer cell lines

Status
Submitted on 23 October 2006, released on 21 November 2006, last updated on 2 May 2014
Organism
Homo sapiens
Samples (51)
Array (1)
Protocols (13)
Description
We measured baseline gene expression profiles for a panel of 51 breast cancer cell lines using the Affymetrix U133A array.
Experiment types
transcription profiling by array, cell type comparison, co-expression, in vitro
Contact
Citations
A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Neve RM, Chin K, Fridlyand J, Yeh J, Baehner FL, Fevr T, Clark L, Bayani N, Coppe JP, Tong F, Speed T, Spellman PT, DeVries S, Lapuk A, Wang NJ, Kuo WL, Stilwell JL, Pinkel D, Albertson DG, Waldman FM, McCormick F, Dickson RB, Johnson MD, Lippman M, Ethier S, Gazdar A, Gray JW.
A community effort to assess and improve drug sensitivity prediction algorithms. Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K, NCI DREAM Community, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. :1202-1212 (2014), PMID:24880487
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-TABM-157.idf.txt
Sample and data relationshipE-TABM-157.sdrf.txt
Raw data (2)E-TABM-157.raw.1.zip, E-TABM-157.raw.2.zip
Processed data (1)E-TABM-157.processed.1.zip
Array designA-AFFY-33.adf.txt
R ExpressionSetE-TABM-157.eSet.r
Links