E-MTAB-9403 - [Smart-seq2] scRNA-seq of mouse Plasmodium-specific CD4+ T cells

Status
Last updated on 14 October 2020, released on 14 October 2020
Organism
Mus musculus
Samples (4480)
Protocols (6)
Description
Plasmodium-specific CD4+ T cells from mice infected with Plasmodium chabaudi chabaudi AS parasites were recovered at Days 0, 7, 10, 14, 17, 21, 28 to undergo processing and generate scRNA-seq dataset. From Day 10 onwards, mice were administered with either saline or artesunate (intermittent artesunate therapy - IAT). scRNA-seq dataset was analysed to investigate transcriptome dynamics of CD4+ T cells from effector to memory states.
Experiment types
RNA-seq of coding RNA from single cells, disease state design, time series design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-9403.idf.txt
Sample and data relationshipE-MTAB-9403.sdrf.txt
Links