E-MTAB-8879 - Open chromatin profiling (ATAC-Seq) from genetically diverse crosses of Drosophila melanogaster during embryogenesis

Status
Last updated on 3 December 2020, released on 4 December 2020
Organism
Drosophila melanogaster
Samples (60)
Protocols (4)
Description
Open chromatin profiling using Tn5 (ATAC-Seq) for 200,000 nuclei per sample using a panel of 8 F1 hybid D. melanogaster lines. Matched data from the two parental lines of one F1 cross were also collected. All paternal fly lines were taken from the Drosophila Genetic Reference Panel crossed to a common mother (PMID31308546). Data were collected at three time points (2-4h, 6-8h, 10-12h at 25C) with two biological replicates per collection.
Experiment types
ATAC-seq, development or differentiation design, replicate design, strain or line design
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-8879.idf.txt
Sample and data relationshipE-MTAB-8879.sdrf.txt
Links