E-MTAB-8509 - scRNAseq of Cyp11a1-expressing cells from mouse melanoma model derived tumors

Status
Submitted on 27 November 2018, last updated on 27 May 2020, released on 27 May 2020
Organism
Mus musculus
Samples (3455)
Protocols (4)
Description
Tumours induce de novo steroidogenesis in immune cells. We wanted to define the gene expression identity of intratumoural steroidogenic immune cells and compare them with the transcriptome with non-steroidogenic cells. Cyp11a1 expression is a faithful biomarker of de novo steroidogenesis (i.e. Cyp11a1+ cells are steroidogenic and Cyp11a1- cells are non-steroidogenic). We inoculated B16-F10 tumor in Cyp11a1-mCherry reporter mice, enriched and purified intratumoral Cyp11a1-mCherry+ and Cyp11a1-mCherry- cells by cell sorting into 96-well plates [with a ratio of 79:15 (mCherry+ : mCherry-) cells per plate] and performed scRNA-seq using SMART-Seq2 platform.
Experiment types
RNA-seq of coding RNA from single cells, cell type comparison design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-8509.idf.txt
Sample and data relationshipE-MTAB-8509.sdrf.txt
Links