E-MTAB-7581 - SRS endotype assignment of septic shock patients from the VANISH randomised trial

Status
Released on 18 December 2018, last updated on 9 January 2019
Organism
Homo sapiens
Samples (176)
Array (1)
Protocols (7)
Description
The aim of the experiment was to assign patients enrolled in the VANISH randomised trial to sepsis response signature (SRS) endotypes based on a previously published gene expression signature, in order to test for differential responses to treatment. VANISH was a double-blind randomised clinical trial in septic shock, with patients randomised to receive norepinephrine or vasopressin followed by hydrocortisone or placebo. We collected blood samples upon enrolment, extracted RNA and performed transcriptomic profiling using microarrays, allocated patients to SRS1 or SRS2 using a linear model (Davenport 2016), and tested for an association between sepsis endotype and response to either norepinephrine or vasopressin, or to corticosteroids. There was a significant interaction between treatment with hydrocortisone or placebo, and SRS endotype (p=0·02)
Experiment type
transcription profiling by array 
Contacts
Citation
Transcriptomic Signatures in Sepsis and a Differential Response to Steroids: From the VANISH Randomized Trial. David B Antcliffe, Katie L Burnham, Farah Al-Beidh, Shalini Santhakumaran, Stephen J Brett, Charles J Hinds, Deborah Ashby, Julian C Knight, Anthony C Gordon.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-7581.idf.txt
Sample and data relationshipE-MTAB-7581.sdrf.txt
Raw data (1)E-MTAB-7581.raw.1.zip
Processed data (1)E-MTAB-7581.processed.1.zip
Array designA-MEXP-2210.adf.txt
Links