E-MTAB-7487 - RNA-seq analysis of Clostridium beijerinckii DSM 6423 at early exponential, acetogenic, and solventogenic growth phase on rhamnose compared to glucose
Status | Last updated on 14 January 2019, released on 14 January 2019 | ||||||||||
Organism | Clostridium beijerinckii | ||||||||||
Samples (12) | |||||||||||
Protocols (5) | |||||||||||
Description | This experiment aim was to characterize the catabolism of L-rhamnose of Clostridium beijerinckii DSM 6423 by transcriptomic analysis, generating new insights and knowledge on utilization of L-rhamnose for production of chemicals, including Isopropanol, Butanol, Ethanol (IBE) and 1,2-propandiol. These analysis on cultures grown on L-rhamnose compared to D-glucose grown cultures showed upregulation of the L-rhamnose-related clusters and genes, and lower expression of the solventogenic genes, which was reflected in the products formed. | ||||||||||
Experiment types | RNA-seq of coding RNA, growth condition design, replicate design | ||||||||||
Contact | |||||||||||
MINSEQE |
| ||||||||||
Files |
| ||||||||||
Links |