E-MTAB-7487 - RNA-seq analysis of Clostridium beijerinckii DSM 6423 at early exponential, acetogenic, and solventogenic growth phase on rhamnose compared to glucose

Status
Last updated on 14 January 2019, released on 14 January 2019
Organism
Clostridium beijerinckii
Samples (12)
Protocols (5)
Description
This experiment aim was to characterize the catabolism of L-rhamnose of Clostridium beijerinckii DSM 6423 by transcriptomic analysis, generating new insights and knowledge on utilization of L-rhamnose for production of chemicals, including Isopropanol, Butanol, Ethanol (IBE) and 1,2-propandiol. These analysis on cultures grown on L-rhamnose compared to D-glucose grown cultures showed upregulation of the L-rhamnose-related clusters and genes, and lower expression of the solventogenic genes, which was reflected in the products formed.
Experiment types
RNA-seq of coding RNA, growth condition design, replicate design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-7487.idf.txt
Sample and data relationshipE-MTAB-7487.sdrf.txt
Links