E-MTAB-6244 - RNA-seq of human U2OS cells depleted of NUAK1 by shRNA compared to control

Status
Submitted on 19 November 2013, released on 1 January 2018, last updated on 26 April 2018
Organism
Homo sapiens
Samples (6)
Protocols (5)
Description
Aim: To determine the impact of NUAK1 depletion on the transcriptome of U2OS cells.
Experiment types
RNA-seq of coding RNA, compound treatment design
Contact
Citation
Colorectal tumors require NUAK1 for protection from oxidative stress. Port,J., Muthalagu, N., Raja, M., Ceteci, F., Monteverde, Kruspig, B., T., Hedley, A., Kalna, G., Lilla, S., Neilson, L., Brucoli, M., Gyuraszova, K., Tait-Mulder, J., Mezna, M., Svambaryte, S., Bryson, A., Sumpton, D., McVie, A., Nixon, C., Drysdale, M., Esumi, H., Murray, G.I., Sansom, O.J., Zanivan, S. & D.J. Murphy. Cancer Discovery 8(5) (2018), PMID:29500295
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-6244.idf.txt
Sample and data relationshipE-MTAB-6244.sdrf.txt
Links