E-MTAB-5656 - Transcription profiling by array of wheat after inoculation with Puccinia triticina, Puccinia hordei or mock-inoculation to identify candidate genes for nonhost resistance against rust disease

Status
Last updated on 1 December 2017, released on 2 December 2017
Organism
Triticum aestivum
Samples (36)
Array (1)
Protocols (5)
Description
In this experiment the transcriptome reprogramming in wheat during host and nonhost interaction with Puccinia sp. was analyzed in a time-series approach. Ten days old wheat plants of cv. Renan were mock-inoculated or inoculated with P. triticina (Pt), BRW96258 isolate, or P. hordei (Ph), 1.2.1 isolate. After 12, 24, 36 and 48 hours first leaves were sampled. Total RNA was extracted using the RNeasy Plant Mini Kit (Qiagen, Hilden, Germany), the Ambion TURBO DNA-free DNase Kit was used for DNA elimination, and RNA was hybridized to Agilent 44k oligonucleotide arrays.
Experiment types
transcription profiling by array, disease state design, time series design
Contacts
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-5656.idf.txt
Sample and data relationshipE-MTAB-5656.sdrf.txt
Raw data (1)E-MTAB-5656.raw.1.zip
Array designA-GEOD-13636.adf.txt