E-MTAB-5377 - Methylation profiling by array of paired blood and saliva samples collected from ten volunteers in the Personal Genome Project (PGP) UK pilot study: PGP-UK10 and the first three genome donations

Status
Submitted on 8 November 2015, released on 12 December 2016, last updated on 23 February 2018
Organism
Homo sapiens
Samples (24)
Array (1)
Protocols (7)
Description
This study consists of 24 genome-wide methylation profiles which have been generated from blood and saliva samples collected from ten volunteers in the Personal Genome Project UK. The Personal Genome Project UK aims to create publicly available genome, health and trait data, and these ten volunteers represent the pilot study (PGP-UK10) and the first three genome donation participants. These samples were bisulphite converted using the EZ DNA methylation kit (Zymo), using the alternative incubation conditions recommended for HumanMethylation450 BeadChip (Illumina). Genome-wide DNA methylation was then profiled using the HumanMethylation450 BeadChip (Illumina).
Experiment types
methylation profiling by array, cross sectional design, genotyping design
Contact
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-5377.idf.txt
Sample and data relationshipE-MTAB-5377.sdrf.txt
Raw data (1)E-MTAB-5377.raw.1.zip
Array designA-GEOD-18809.adf.txt
Links