E-MTAB-5111 - Akkermanisa muciniphila response to oxygen exposure

Status
Last updated on 30 September 2016, released on 30 September 2016
Organism
Akkermansia muciniphila ATCC BAA-835
Samples (15)
Protocols (6)
Description
The anaerobic gut microbe Akkermansia muciniphila ATCC BAA-835 lives in the mucus layer where it is exposed to oxygen. To investigate how it survives the changing oxygen concentrations, we exposed a exponentially growing culture to oxygen. The experiment was performed in parallel fermentor systems. To one system we added 0.2l/h oxygen after the culture reached an OD of 0.1, while the other remained anaerobic. Samples were taken just before addition of oxygen, about 1h after and when the cell reached stationary phase.
Experiment types
RNA-seq of coding RNA, growth condition design, stimulus or stress design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-5111.idf.txt
Sample and data relationshipE-MTAB-5111.sdrf.txt
Processed data (1)E-MTAB-5111.processed.1.zip
Links