E-MTAB-4888 - RNA-seq of coding RNA from single cells to assess the impact of aging on cell-to-cell transcriptional variability during immune stimulation

Status
Submitted on 16 June 2016, released on 21 July 2016, last updated on 13 February 2017
Organism
Mus musculus castaneus, Mus musculus domesticus
Samples (4032)
Protocols (6)
Description
We explored how aging impacts transcriptional dynamics using single-cell RNA-sequencing to profile hundreds of CD4+ T cells from young and old mice from two divergent species. In young animals, immunological challenge drives a conserved transcriptomic switch from highly variable to tightly regulated gene expression, characterized by a strong up-regulation of a core activation program, coupled with a decrease in cell-to-cell variability. Aging significantly perturbed the activation of this core program, and increased expression heterogeneity across the population of cells in both species.
Experiment types
RNA-seq of coding RNA from single cells, cell type comparison design, species comparison design
Contact
Citation
Aging increases cell-to-cell transcriptional variability upon immune stimulation. Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJ, Teichmann SA, de la Roche M, Marioni JC, Odom DT. 355(6332):1433-1436 (2017), PMID:28360329
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4888.idf.txt
Sample and data relationshipE-MTAB-4888.sdrf.txt
Processed data (2)E-MTAB-4888.processed.1.zip, E-MTAB-4888.processed.2.zip
Additional data (1)E-MTAB-4888.additional.1.zip
Links