E-MTAB-4519 - Analysis of transcriptomes from 21 tissues, 13 melanoma samples and 7 breast cancer cell lines, enriched for transcripts from haploblocks with intronic and intergenic GWAS SNPs

Status
Last updated on 3 July 2017, released on 4 July 2017
Organism
Homo sapiens
Samples (41)
Protocols (4)
Description
Analysis of transcriptomes from 21 tissues, 13 melanoma samples and 7 breast cancer cell lines, enriched for transcripts from haploblocks with intronic and intergenic GWAS SNPs using CaptureSeq.
Experiment types
RNA-seq of coding RNA, disease state design, organism part comparison design, strain or line design
Contacts
Citation
Intergenic disease-associated regions are abundant in novel transcripts. Bartonicek N, Clark MB, Quek XC, Torpy JR, Pritchard AL, Maag JLV, Gloss BS, Crawford J, Taft RJ, Hayward NK, Montgomery GW, Mattick JS, Mercer TR, Dinger ME. 18(1):241 (2017), PMID:29284497
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-4519.idf.txt
Sample and data relationshipE-MTAB-4519.sdrf.txt
Links