E-MTAB-437 - ChIP-seq study of CTCF binding evolution in human, macaque, mouse, rat and opossum

Status
Released on 1 November 2011, last updated on 3 May 2014
Organism
Canis familiaris, Homo sapiens, Macaca mulatta, Monodelphis domesticus, Mus musculus, Rattus norvegicus
Samples (34)
Protocols (5)
Description
ChIP-seq study in human, macaque, mouse, rat and opossum for CTCF (milipore: 07-729 and custom AB in opossum), STAG1 in opossum (abcam: ab4457)
Experiment types
ChIP-seq, binding site identification, high throughput sequencing
Contact
Citation
CTCF binding evolution in mammals: conservation and repeat driven expansion. Dominic Schmidt, Petra C. Schwalie, Michael D. Wilson, Gordon D. Brown, Paul Flicek, Duncan T. Odom.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-437.idf.txt
Sample and data relationshipE-MTAB-437.sdrf.txt
Processed data (1)E-MTAB-437.processed.1.zip
Links