E-MTAB-3947 - Analysis of single CD41 cell transcriptomes from Zebrafish

Status
Submitted on 1 November 2014, released on 8 January 2016, last updated on 26 January 2016
Organism
Danio rerio
Samples (672)
Protocols (3)
Description
Transcriptome data from individual CD41 expressing cells isolated from kidney and heart of zebrafish. CD41 is a marker both for HSCs and thrombocytes, and with this data we study thrombocyte development as a continuous process. Single cell transcriptomes are matched with flourescence of a CD41:GFP reporter.
Experiment type
RNA-seq of coding RNA from single cells 
Contact
Citation
Single-Cell RNA-Sequencing Reveals a Continuous Spectrum of Differentiation in Hematopoietic Cells. Iain C. Macaulay, Valentine Svensson, Charlotte Labalette, Lauren Ferreira, Fiona Hamey, Thierry Voet, Sarah A. Teichmann, Ana Cvejic. Cell Reports  (2016), PMID:26804912
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-3947.idf.txt
Sample and data relationshipE-MTAB-3947.sdrf.txt
Additional data (1)E-MTAB-3947.additional.1.zip
Links