E-MTAB-3656 - Variation and genetic control of chromatin architecture in humans (RNAseq)

Status
Released on 27 May 2016, last updated on 5 March 2019
Organism
Homo sapiens
Samples (159)
Protocols (5)
Description
This data set comprises population (46 samples) measurements of RNA expression levels for a subset of the 1000 Genomes Project CEPH samples. This data was generated as part of the following study: - Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. Cell. 2015 Aug 27;162(5):1039-50. doi: 10.1016/j.cell.2015.08.001. Epub 2015 Aug 20. An additional set of 111 samples from the 1000 Genomes Project (GBR and TSI populations) were also assayed using RNA-seq. This data was generated as part of the following study: - Chromatin 3D interactions mediate genetic effects on regulatory networks.
Experiment types
RNA-seq of coding RNA, operator variation design, population based design
Contacts
Citations
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. SM. Waszak, O. Delaneau, AR. Gschwind, H. Kilpinen, SK. Raghav, RM. Witwicki, A. Orioli, M. Wiederkehr, NI. Panousis, A. Yurovsky, L. Romano-Palumbo, A. Planchon, D. Bielser, I. Padioleau, G. Udin, S. Thurnheer, D. Hacker, N. Hernandez, A. Reymond, B. Deplancke, ET. Dermitzakis. , PMID:26300124
Chromatin 3D interactions mediate genetic effects on gene expression. O. Delaneau, M. Zazhytska, C. Borel, G. Giannuzzi, G. Rey, C. Howald, S. Kumar, H. Ongen, K. Popadin, D. Marbach, G. Ambrosini, D. Bielser, D. Hacker, L. Romano-Palumbo, P. Ribaux, M. Wiederkehr, E. Falconnet, P. Bucher, S. Bergmann, S. E. Antonarakis, A. Reymond, E. T. Dermitzakis.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-3656.idf.txt
Sample and data relationshipE-MTAB-3656.sdrf.txt
Links