E-MTAB-3656 - Variation and genetic control of chromatin architecture in humans (RNAseq)
Released on 27 May 2016, last updated on 5 March 2019
This data set comprises population (46 samples) measurements of RNA expression levels for a subset of the 1000 Genomes Project CEPH samples. This data was generated as part of the following study: - Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. Cell. 2015 Aug 27;162(5):1039-50. doi: 10.1016/j.cell.2015.08.001. Epub 2015 Aug 20. An additional set of 111 samples from the 1000 Genomes Project (GBR and TSI populations) were also assayed using RNA-seq. This data was generated as part of the following study: - Chromatin 3D interactions mediate genetic effects on regulatory networks.
RNA-seq of coding RNA, operator variation design, population based design
Population Variation and Genetic Control of Modular Chromatin Architecture in Humans. SM. Waszak, O. Delaneau, AR. Gschwind, H. Kilpinen, SK. Raghav, RM. Witwicki, A. Orioli, M. Wiederkehr, NI. Panousis, A. Yurovsky, L. Romano-Palumbo, A. Planchon, D. Bielser, I. Padioleau, G. Udin, S. Thurnheer, D. Hacker, N. Hernandez, A. Reymond, B. Deplancke, ET. Dermitzakis. , PMID:26300124
Chromatin 3D interactions mediate genetic effects on gene expression. O. Delaneau, M. Zazhytska, C. Borel, G. Giannuzzi, G. Rey, C. Howald, S. Kumar, H. Ongen, K. Popadin, D. Marbach, G. Ambrosini, D. Bielser, D. Hacker, L. Romano-Palumbo, P. Ribaux, M. Wiederkehr, E. Falconnet, P. Bucher, S. Bergmann, S. E. Antonarakis, A. Reymond, E. T. Dermitzakis.