E-MTAB-3321 - Single-cell RNA-seq of blastomeres from 2- to 32-cell stage mouse embryos

Released on 23 March 2016, last updated on 18 August 2021
Mus musculus
Samples (124)
Protocols (4)
Transcriptomes were determined for all blastomeres of 28 embryos at the 2- (n=8), 4- (n=16) and 8-cell (n=4) stages, and for individual cells taken from 16- (n=6) and 32- (n=6) cell stage embryos. We also carefully monitored the 2- to 4-cell divisions noting whether the cleavage plane was meridional (M, along the Animal-Vegetal (AV) axis marked by the second attached polar body) or equatorial (E, bisecting the AV axis) and the order in which such divisions occurred. This resulted in four groups of 4-cell stage embryos: ME, EM, MM and EE, which were all collected 10 hours after the first 2- to 4-cell division.
Experiment types
RNA-seq of coding RNA from single cells, development or differentiation design
Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos. Goolam M, Scialdone A, Graham SJL, Macaulay IC, Jedrusik A, Hupalowska A, Voet T, Marioni JC, Zernicka-Goetz M. , PMID:27015307
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-MTAB-3321.idf.txt
Sample and data relationshipE-MTAB-3321.sdrf.txt
Processed data (1)E-MTAB-3321.processed.1.zip
Additional data (1)E-MTAB-3321.additional.1.zip