E-MTAB-2909 - RNA-seq of lung and ileum samples at 1 and 3 days post infection (dpi) from ducks infected with either low pathogenic (H5N2) or highly pathogenic (H5N1) avian influenza

Status
Submitted on 1 August 2011, released on 19 January 2015, last updated on 29 May 2015
Organism
Anas platyrhynchos
Samples (36)
Protocols (7)
Description
Transcriptional profiling was carried out on lung and ileum samples at 1dpi and 3dpi from ducks infected with either low pathogenic (H5N2) or highly pathogenic (H5N1) avian influenza. Infected birds were compared to control birds at each time point.
Experiment types
RNA-seq of coding RNA, disease state design
Contact
Citations
A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance. Jacqueline Smith, Le Yu, Ian R. Paton, Maria Weronika Gutowska, Heather L. Forrest, Angela F. Danner, J. Patrick Seiler, Robert G. Webster, David W. Burt.
The Avian RNAseq Consortium: a community effort to annotate the chicken genome. Smith et al.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2909.idf.txt
Sample and data relationshipE-MTAB-2909.sdrf.txt
Processed data (36)Click to browse processed data
Links