E-MTAB-2805 - Gene expression pattern of single mES cells during cell cycle stages

Status
Released on 29 December 2014, last updated on 13 February 2015
Organism
Mus musculus
Samples (288)
Protocols (8)
Description
In this study, we aimed to study the gene expression patterns at single cell level across the different cell cycle stages in mESC. We performed single cell RNA-Seq experiment on mESC that were stained with Hoechst 33342 and Flow cytometry sorted for G1, S and G2M stages of cell cycle. Single cell RNA-Seq was performed using Fluidigm C1 system and libraries were generated using Nextera XT (Illumina) kit.
Experiment types
RNA-seq of coding RNA from single cells, cell type comparison design, co-expression, in vitro
Contact
Citation
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells. Florian Buettner, Kedar N Natarajan, F Paolo Casale, Valentina Proserpio, Antonio Scialdone, Fabian J Theis, Sarah A Teichmann, John C Marioni & Oliver Stegle. http://www.nature.com/nbt/journal/v33/n2/full/nbt.3102.html Volume 33 No 2:155 - 160 (2015), PMID:25599176
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2805.idf.txt
Sample and data relationshipE-MTAB-2805.sdrf.txt
Processed data (1)E-MTAB-2805.processed.1.zip
Additional data (1)E-MTAB-2805.additional.1.zip
Links