E-MTAB-2323 - Promoter capture GM12878 CD34

Status
Released on 1 March 2015, last updated on 21 April 2015
Organism
Homo sapiens
Samples (11)
Protocols (3)
Description
Genome organization influences transcriptional regulation by facilitating interactions between gene promoters and distal regulatory elements. To analyse distal promoter contacts we used Capture Hi-C (CHi-C) to enrich for promoter-interactions in a HiC lib
Experiment types
DNA-seq, cell type comparison design, in vivo, replicate design
Contacts
Citation
Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C. Borbala Mifsud, Filipe Tavares-Cadete, Alice N. Young, Robert Sugar, Stefan Schoenfelder, Lauren Ferreira, Steven Wingett, Simon Andrews, William Grey, Philip A. Ewels, Bram Herman, Scott Happe, Andy Higgs, Emily LeProust, George A. Follows, Peter Fraser, Nicholas M. Luscombe, Cameron S. Osborne.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-2323.idf.txt
Sample and data relationshipE-MTAB-2323.sdrf.txt
Additional data (1)E-MTAB-2323.additional.1.zip
Links