E-MTAB-198 - Transcription profiling by array of human HapMap CEU caucasian lymphoblastoid cells to investigate candidate causal regulatory effects

Status
Released on 1 June 2010, last updated on 2 May 2014
Organism
Homo sapiens
Samples (114)
Array (1)
Protocols (5)
Description
Array quantification of 112 HapMap CEU individuals, 60 supporting RNA-seq of the same individuals, 109 supporting HapMap3 analysis
Experiment types
transcription profiling by array, in vitro, individual genetic characteristics
Contact
Citations
Transcriptome genetics using second generation sequencing in a Caucasian population. Stephen B. Montgomery, Micha Sammeth, Maria Gutierrez-Arcelus, Radoslaw P. Lach, Catherine Ingle, James Nisbett, Roderic Guigo, Emmanouil T. Dermitzakis.
Host genetic variants and gene expression patterns associated with Epstein-Barr virus copy number in lymphoblastoid cell lines. Houldcroft CJ, Petrova V, Liu JZ, Frampton D, Anderson CA, Gall A, Kellam P. :e108384 (2014), Europe PMC 25290448
Sex-biased genetic effects on gene regulation in humans. Antigone S. Dimas; Alexandra C. Nica; Stephen B. Montgomery; Barbara E. Stranger; Towfique Raj; Alfonso Buil; Thomas Giger; Tuuli Lappalainen; Maria Gutierrez-Arcelus; Mark I. McCarthy; Emmanouil T. Dermitzakis. Genome Res 22(12):2368 (2012), Europe PMC 22960374
Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations. Alexandra C. Nica, Stephen B. Montgomery, Antigone S. Dimas, Barbara E. Stranger, Claude Beazley, Ines Barroso, Emmanouil T. Dermitzakis.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-198.idf.txt
Sample and data relationshipE-MTAB-198.sdrf.txt
Raw data (1)E-MTAB-198.raw.1.zip
Processed data (1)E-MTAB-198.processed.1.zip
Array designA-MEXP-930.adf.txt
Links