E-MTAB-1866 - Methylation profiling by array of subcutaneous fat derived from 856 TwinsUK participants
Released on 1 October 2013, last updated on 13 May 2014
Epigenetic changes such as DNA methylation variation are known to play a role in gene regulation and common disease susceptibility. Little is known about the genome-wide frequency, localization and function of such changes and how they are regulated by genetic and environmental factors. We have utilized the MuTHER resource and generated methylation profiles across multiple tissues conducted in a large set of female individuals that allows systematic dissection of genetic and non-genetic effects on DNA methylation. DNA methylation was quantified in subcutaneous fat and skin derived from 648 TwinsUK participants using the Infinium HumanMethylation450 BeadChips. Data from transcription profiling of skin, adipose fat and lymphoblastoid cell lines (LCLs) from the same set of TwinsUK participants have been deposited in ArrayExpress under accession number E-TABM-1140 (https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-1140).
methylation profiling by array, all pairs, binding site identification, organism part comparison
Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation. Busche S, Shao X, Caron M, Kwan T, Allum F, Cheung WA, Ge B, Westfall S, Simon MM, Multiple Tissue Human Expression Resource, Barrett A, Bell JT, McCarthy MI, Deloukas P, Blanchette M, Bourque G, Spector TD, Lathrop M, Pastinen T, Grundberg E. :290 (2015), PMID:26699896
Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements. Elin Grundberg, Eshwar Meduri, Johanna K. Sandling, Åsa K. Hedman, Sarah Keildson, Alfonso Buil, Stephan Busche, Wei Yuan, James Nisbet, Magdalena Sekowska, Alicja Wilk, Amy Barrett, Kerrin S. Small, Bing Ge, Maxime Caron, So-Youn Shin, the MuTHER consortium, Mark Lathrop, Emmanouil T. Dermitzakis, Mark I. McCarthy, Timothy D. Spector, Jordana T. Bell, Panos Deloukas.
Mapping cis- and trans-regulatory effects across multiple tissues in twins. Grundberg E, Small KS, Hedman ÅK, Nica AC, Buil A, Keildson S, Bell JT, Yang TP, Meduri E, Barrett A, Nisbett J, Sekowska M, Wilk A, Shin SY, Glass D, Travers M, Min JL, Ring S, Ho K, Thorleifsson G, Kong A, Thorsteindottir U, Ainali C, Dimas AS, Hassanali N, Ingle C, Knowles D, Krestyaninova M, Lowe CE, Di Meglio P, Montgomery SB, Parts L, Potter S, Surdulescu G, Tsaprouni L, Tsoka S, Bataille V, Durbin R, Nestle FO, O'Rahilly S, Soranzo N, Lindgren CM, Zondervan KT, Ahmadi KR, Schadt EE, Stefansson K, Smith GD, McCarthy MI, Deloukas P, Dermitzakis ET, Spector TD; Multiple Tissue Human Expression Resource (MuTHER) Consortium.