E-MTAB-1733 - RNA-seq of coding RNA from tissue samples of 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes

Status
Released on 6 December 2013, last updated on 2 May 2014
Organism
Homo sapiens
Samples (95)
Protocols (6)
Description
RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes.
Experiment types
RNA-seq of coding RNA, ex vivo, organism part comparison design
Contact
Citations
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Fagerberg L, Hallström BM, Oksvold P, Kampf C, Djureinovic D, Odeberg J, Habuka M, Tahmasebpoor S, Danielsson A, Edlund K, Asplund A, Sjöstedt E, Lundberg E, Szigyarto CA, Skogs M, Takanen JO, Berling H, Tegel H, Mulder J, Nilsson P, Schwenk JM, Lindskog C, Danielsson F, Mardinoglu A, Sivertsson A, von Feilitzen K, Forsberg M, Zwahlen M, Olsson I, Navani S, Huss M, Nielsen J, Ponten F, Uhlén M. :397-406 (2014), Europe PMC 24309898
Expression of human skin-specific genes defined by transcriptomics and antibody-based profiling. Edqvist PH, Fagerberg L, Hallström BM, Danielsson A, Edlund K, Uhlén M, Pontén F. :129-141 (2015), Europe PMC 25411189
Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics. Linn Fagerberg, Björn M Hallström, Per Oksvold, Caroline Kampf, Dijana Djureinovic, Jacob Odeberg, Masato Habuka, Simin Tahmasebpoor, Angelika Danielsson, Karolina Edlund, Anna Asplund, Evelina Sjöstedt, Emma Lundberg, Cristina Al-Khalili Szigyarto, Marie Skogs, Jenny Ottosson Takanen, Holger Berling, Hanna Tegel, Jan Mulder, Peter Nilsson, Jochen M Schwenk, Cecilia Lindskog, Frida Danielsson, Adil Mardinoglu, Åsa Sivertsson, Kalle von Felitzen, Mattias Forsberg, Martin Zwahlen, IngMarie Olsson, Sanjay Navani, Mikael Huss, Jens Nielsen, Fredrik Ponten and Mathias Uhlén. Molecular & Cellular Proteomics  (2013)
The human pancreas proteome defined by transcriptomics and antibody-based profiling. Danielsson A, Pontén F, Fagerberg L, Hallström BM, Schwenk JM, Uhlén M, Korsgren O, Lindskog C. :e115421 (2014), Europe PMC 25546435
Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex. Sjöstedt E, Fagerberg L, Hallström BM, Häggmark A, Mitsios N, Nilsson P, Pontén F, Hökfelt T, Uhlén M, Mulder J. :e0130028 (2015), Europe PMC 26076492
Characterization of non-olfactory GPCRs in human sperm with a focus on GPR18. Flegel C, Vogel F, Hofreuter A, Wojcik S, Schoeder C, Kieć-Kononowicz K, Brockmeyer NH, Müller CE, Becker C, Altmüller J, Hatt H, Gisselmann G. :32255 (2016), Europe PMC 27572937
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-1733.idf.txt
Sample and data relationshipE-MTAB-1733.sdrf.txt
Processed data (1)E-MTAB-1733.processed.1.zip
Links