E-GEUV-6 - Re-analysis of 667 assays from the GEUVADIS study

Released on 17 April 2014, last updated on 27 April 2014
Homo sapiens
Samples (463)
Protocols (5)
Re-analysis of 667 assays (463 samples) from Geuavdis study has been performed to demonstrate the flexibility of the Ballgown package to identify transcript-level eQTLs and identify non-linear artifacts in transcript data. Our package Ballgown is freely available from: https://github.com/alyssafrazee/ballgown. Geuvadis RNA sequencing data set of 465 human lymphoblastoid cell line samples from the CEU, FIN, GBR, TSI and YRI populations from the 1000 Genomes sample collection was created by the Geuvadis consortium (www.geuvadis.org, http://www.geuvadis.org/web/geuvadis/our-rnaseq-project). Original Geuvadis mRNA and small RNA sequencing data, clean data that passed QC and other filters, processed files and analysis results are available under accession E-GEUV-1, E-GEUV-2, E-GEUV-3.
Experiment types
RNA-seq of coding RNA, operator variation design, population based design
Polyester: simulating RNA-seq datasets with differential transcript expression. Frazee AC, Jaffe AE, Langmead B, Leek JT. :2778-2784 (2015), PMID:25926345
Exp. designProtocolsVariablesProcessedSeq. reads
Investigation descriptionE-GEUV-6.idf.txt
Sample and data relationshipE-GEUV-6.sdrf.txt
Processed data (667)Click to browse processed data