Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-9723 - Transcription profiling by array of human gingival epithelial cells infected with Aggregatibacter actinomycetemcomitans or Porphyromonas gingivalis

Status
Released on 24 April 2009, last updated on 30 April 2015
Organism
Homo sapiens
Samples (12)
Array (1)
Protocols (7)
Description
Transcriptional profiling was utilized to define the biological pathways of gingival epithelial cells modulated by co-culture with the oral pathogenic Porphyromonas gingivalis and Aggregatibacter (formerly actinobacillus) actinomycetemcomitans. We used microarrays to detail the global programme of gene expression underlying infection and identified distinct classes of up- and down-regulated genes during this process. Experiment Overall Design: Gingival epithelial HIGK cells were sham infected (CTRL) and infected with either the oral pathogenic P. gingivalis (Pg) or A. actinomycetemcomitans (Aa). These samples were hybridized to Affymetrix microarrays. Understanding how host cells have adapted to pathogens, and how barrier cells respond to limit their impact, provides a mechanistic biological basis of microbial disease in the mixed bacterial-human ecosystem of the oral cavity.
Experiment types
transcription profiling by array, disease state design
Contact
Citation
Distinct transcriptional profiles characterize oral epithelium-microbiota interactions. Martin Handfield, Jeffrey J Mans, Gaolin Zheng, M Cecilia Lopez, Song Mao, Ann Progulske-Fox, Giri Narasimhan, Henry V Baker, Richard J Lamont.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-9723.idf.txt
Sample and data relationshipE-GEOD-9723.sdrf.txt
Raw data (1)E-GEOD-9723.raw.1.zip
Processed data (1)E-GEOD-9723.processed.1.zip
Additional data (1)E-GEOD-9723.additional.1.zip
Array designA-AFFY-33.adf.txt
Links