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E-GEOD-53630 - Transcriptomic analyses of Kras induced zebrafish liver cancer

Status
Released on 24 December 2013, last updated on 15 April 2014
Organism
Danio rerio
Samples (4)
Protocols (3)
Description
The kras transgenic line was generated by using a mifepristone-inducible transgenic system in combination with a Cre-loxP system. Most of the induced transgenic fish developed hepatocellular carcinoma at 6 month-post-induction. Transcriptome profiling of Kras tumor sample (6T1 and 6T2) and control samples (6M1 and 6M2) were generated by deep sequencing, using 3' RNA-SAGE on SOLiD system
Experiment type
RNA-seq of coding RNA 
Contacts
Alexander Emelyanov, Anh T Nguyen, Weiling Zheng, Zhiyuan Gong
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
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