Please note that we have stopped the regular imports of Gene Expression Omnibus (GEO) data into ArrayExpress. This may not be the latest version of this experiment.

E-GEOD-49945 - Genome-wide comparative ChIP-seq data of H3K27me3 and RNA-seq data in Drosophila white prepupa on Illumina Genome Analyzer

Status
Released on 17 August 2013, last updated on 5 September 2013
Organism
Drosophila melanogaster, Drosophila pseudoobscura, Drosophila simulans, Drosophila yakuba
Samples (4)
Protocols (2)
Description
This data consists of RNA-seq data of whole animal white pre pupa of four Drosophila species: Drosophila melanogaster, Drosophila simulans, Drosophila yakuba, and Drosophila pseudoobscura. The processed RPKM values are calculated following the method in Garber et al 2011 Nature Methods paper. Examination of H3K27me3 in 4 Drosophila species and its correlation with gene expression levels in the same development stage relevant ChIP-seq data can be found in GSE25663, GSE25668
Experiment type
RNA-seq of coding RNA 
Contacts
Kevin White <geo@ncbi.nlm.nih.gov>, K P White, R K Arthur
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-49945.idf.txt
Sample and data relationshipE-GEOD-49945.sdrf.txt
Processed data (2)E-GEOD-49945.BAM.SRR953385.bam, E-GEOD-49945.processed.1.zip
Links