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E-GEOD-47495 - Transcriptional profiling of left ventricle and peripheral blood cells in rats with post-myocardial infarction

Status
Released on 15 November 2013, last updated on 25 November 2013
Organism
Rattus norvegicus
Samples (34)
Array (1)
Protocols (5)
Description
Myocardial infarction (MI) often results in left ventricular (LV) remodeling followed by heart failure (HF). It is of great clinical importance to understand the molecular mechanisms that trigger transition from compensated LV injury to HF and to identify relevant diagnostic biomarkers. In this study, we performed transcriptional profiling of LVs in rats with a wide range of experimentally induced infarct sizes and of peripheral blood mononuclear cells (PBMCs) in animals that developed HF. We used microarrays to investigate gene expression in the left ventricle (LV) accompanying myocardial infarction and concomitant heart failure (HF) in a well validated model of post-infarcted heart failure and to evaluate their reflection in peripheral blood mononuclear cells (PBMCs) Myocardial infarction (MI) was induced in male Wistar rats by ligation of the proximal left coronary artery. The sham-operated group (control group) was subjected to the same protocol, except that the suture was not tied around the proximal left coronary artery. Sham-operated rats (n=6) and rats with small (n=6), moderate (n=6), and large (n=5) MI size were included into the experiment two months after the operation. Then, left ventricules and blood samples were obtained for RNA extraction and hybridization on Affymetrix microarrays. Microarrays were used to compare the LV and PBMCs transcriptomes of control and experimental animals. The development of heart failure was estimated by echocardiography and catheterization.
Experiment type
transcription profiling by array 
Contacts
Dorota Anna Tulacz <dtulacz@ibb.waw.pl>, Beata Burzynska, Dorota Tulacz, Michal Maczewski, Monika Gora, Urszula Mackiewicz
Citation
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-47495.idf.txt
Sample and data relationshipE-GEOD-47495.sdrf.txt
Raw data (1)E-GEOD-47495.raw.1.zip
Processed data (1)E-GEOD-47495.processed.1.zip
Array designA-GEOD-6247.adf.txt
Links