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E-GEOD-39424 - Continuous gene expression profile of root at daytime throughout the entire growth of rice in the field

Status
Released on 3 December 2012, last updated on 20 April 2016
Organism
Oryza sativa Japonica Group
Samples (14)
Array (1)
Protocols (10)
Description
A continuous gene expression profiling of roots was performed during daytime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. Roots were sampled at daytime (12:00) at 7-day intervals encompassing 14 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.
Experiment type
transcription profiling by array 
Contacts
Yutaka Sato <satoyu@affrc.go.jp>, Baltazar Antonio, Hinako Takehisa, Nobukazu Namiki, Yoshiaki Nagamura
Citations
RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome. Sato Y, Takehisa H, Kamatsuki K, Minami H, Namiki N, Ikawa H, Ohyanagi H, Sugimoto K, Antonio BA, Nagamura Y. , PMID:23180765
RiceFREND: a platform for retrieving coexpressed gene networks in rice. Sato Y, Namiki N, Takehisa H, Kamatsuki K, Minami H, Ikawa H, Ohyanagi H, Sugimoto K, Itoh JI, Antonio BA, Nagamura Y. , PMID:23180784
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-39424.idf.txt
Sample and data relationshipE-GEOD-39424.sdrf.txt
Raw data (1)E-GEOD-39424.raw.1.zip
Processed data (1)E-GEOD-39424.processed.1.zip
Array designA-GEOD-6864.adf.txt
Links