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E-GEOD-36042 - Continuous gene expression profile of leaf at nighttime throughout the entire growth of rice in the field

Status
Released on 3 December 2012, last updated on 20 April 2016
Organism
Oryza sativa Japonica Group
Samples (34)
Array (1)
Protocols (12)
Description
A continuous gene expression profiling of leaves was performed during nighttime at regular interval from transplanting until harvesting to understand the changes of transcriptional program and physiological state throughout entire growth of the rice plant under natural field conditions. The uppermost fully-expanded leaf in the main stem corresponding to the 1st leaf until 83 days after transplanting (DAT) and the flag leaf from them on were sampled in two replicates at 12:00 midnight at 7- day intervals encompassing 17 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.
Experiment type
transcription profiling by array 
Contacts
Baltazar Antonio, Nobukazu Namiki, Yoshiaki Nagamura, Yutaka Sato
Citations
RiceXPro Version 3.0: expanding the informatics resource for rice transcriptome. Sato Y, Takehisa H, Kamatsuki K, Minami H, Namiki N, Ikawa H, Ohyanagi H, Sugimoto K, Antonio BA, Nagamura Y. , PMID:23180765
RiceFREND: a platform for retrieving coexpressed gene networks in rice. Sato Y, Namiki N, Takehisa H, Kamatsuki K, Minami H, Ikawa H, Ohyanagi H, Sugimoto K, Itoh JI, Antonio BA, Nagamura Y. , PMID:23180784
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-36042.idf.txt
Sample and data relationshipE-GEOD-36042.sdrf.txt
Raw data (2)E-GEOD-36042.raw.1.zip, E-GEOD-36042.raw.2.zip
Processed data (1)E-GEOD-36042.processed.1.zip
Array designA-GEOD-6864.adf.txt
Links