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E-GEOD-30069 - Analysis of transcript abundance during appressorium formation in the rice blast fungus Magnaporthe oryzae using HT-SuperSAGE

Status
Released on 13 February 2012, last updated on 3 April 2013
Organism
Magnaporthe oryzae
Samples (12)
Protocols (3)
Description
The rice-blast fungus Magnaporthe oryzae is disseminated using a three-celled spore or conidium. Upon landing on the surface of a rice leaf, the conidium germinates and forms a specialised structure for entry into the host plant - the appressorium. In this study we have followed gene expression thoughout germination of the conidium and formation of the appressorium to identify genes that may be important for appressorium function. We have also compared gene expression in the wild-type germinating conidium at four hours to a mutant strain deleted for the MAP kinase pmk1. The pmk1 mutant is unable to form appressoria. Samples were taken from five time-points in wild-type germinating conidia and one time-point in the pmk1 mutant. Two replicates were taken at each time-point.
Experiment types
transcription profiling by SAGE, RNA-seq of coding RNA 
Contacts
Darren Mark Soanes <d.m.soanes@exeter.ac.uk>, Angus L Dawe, Apratim Chakrabarti, Darren M Soanes, Konrad H Paszkiewicz, Nicholas J Talbot
Citation
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-GEOD-30069.idf.txt
Sample and data relationshipE-GEOD-30069.sdrf.txt
Processed data (1)E-GEOD-30069.processed.1.zip
Links