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E-GEOD-29735 - Similar effects of an NO challenge and an lpdA knockout on transcription of Salmonella enterica sv Typhimurium 14028

Status
Released on 4 June 2011, last updated on 3 May 2014
Organism
Salmonella enterica subsp. enterica serovar Typhimurium
Samples (20)
Arrays (2)
Protocols (9)
Description
Transcriptional profiling of Salmonella enterica sv Typhimurium under NO stress and comparison of profiles between wild type and lpdA mutant cultures. We investigated the bacteriostatic nature of NO·. S. Typhmurium 14028s is prototrophic for all amino acids but cannot synthesize Methionine or Lysine during nitrosative stress. This MK auxotrophy results from reduced availability of succinyl-CoA, a consequence of NO· targeting lipoamide-dependent LpdA activity. LpdA is an essential component of the pyruvate and α-ketoglutarate dehydrogenase complexes. Additional effects of NO· on gene regulation prevent compensatory pathways of succinyl-CoA production. By microarray analysis, more than 50% of the transcriptional response of S. Typhimurium to nitrosative stress is attributable to LpdA inhibition. Two separate two-condition experiment: NO treated versus untreated, wild type versus lpdA mutant. Three biological replicates. Dye swaps performed on two of these.
Experiment type
transcription profiling by array 
Contacts
Ferric C Fang, Michael McClelland, Steffen Porwollik, Stephen J Libby, Vinai C Thomas
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-29735.idf.txt
Sample and data relationshipE-GEOD-29735.sdrf.txt
Raw data (1)E-GEOD-29735.raw.1.zip
Processed data (1)E-GEOD-29735.processed.1.zip
Array designsA-GEOD-11279.adf.txt, A-GEOD-6868.adf.txt
Links