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E-GEOD-26910 - Stromal molecular signatures of breast and prostate cancer

Status
Released on 31 March 2011, last updated on 14 April 2011
Organism
Homo sapiens
Samples (24)
Array (1)
Protocols (6)
Description
Primary tumor growth induces host tissue responses that are believed to support and promote tumor progression. Identification of the molecular characteristics of the tumor microenvironment and elucidation of its crosstalk with tumor cells may therefore be crucial for improving our understanding of the processes implicated in cancer progression, identifying potential therapeutic targets, and uncovering stromal gene expression signatures that may predict clinical outcome. A key issue to resolve, therefore, is whether the stromal response to tumor growth is largely a generic phenomenon, irrespective of the tumor type, or whether the response reflects tumor-specific properties. To address similarity or distinction of stromal gene expression changes during cancer progression, oligonucleotide-based Affymetrix microarray technology was used to compare the transcriptomes of laser-microdissected stromal cells derived from invasive human breast and prostate carcinoma. Invasive breast and prostate cancer-associated stroma was observed to display distinct transcriptomes, with a limited number of shared genes. Interestingly, both breast and prostate tumor-specific dysregulated stromal genes were observed to cluster breast and prostate cancer patients, respectively, into two distinct groups with statistically different clinical outcomes. By contrast, a gene signature that was common to the reactive stroma of both tumor types did not have survival predictive value. Univariate Cox analysis identified genes whose expression level was most strongly associated with patient survival. Taken together, these observations suggest that the tumor microenvironment displays distinct features according to the tumor type that provides survival-predictive value. 6 samples of stroma surrounding invasive breast primary tumors; 6 matched samples of normal stroma. 6 samples of stroma surrounding invasive prostate primary tumors; 6 matched samples of normal stroma.
Experiment type
transcription profiling by array 
Contacts
Anne Planche, Carlo Fusco, Ivan Stamenkovic, Jean-Christophe Stehle, Marina Bacac, Mauro Delorenzi, Paolo Provero
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-26910.idf.txt
Sample and data relationshipE-GEOD-26910.sdrf.txt
Raw data (1)E-GEOD-26910.raw.1.zip
Processed data (1)E-GEOD-26910.processed.1.zip
Array designA-AFFY-44.adf.txt
R ExpressionSetE-GEOD-26910.eSet.r
Links