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E-GEOD-16441 - Identifying mRNA targets of microRNA in clear cell renal cell carcinoma

Status
Released on 28 February 2011, last updated on 1 May 2014
Organism
Homo sapiens
Samples (102)
Arrays (2)
Protocols (13)
Description
A bioinformatic approach to identify targets of microRNA in cancer. Keywords: Patient sample study Samples GSM413237-GSM413270: Total RNA from 17 RCC tumors and 17 corresponding non-tumor samples was hybridized against a common reference RNA (Perou CM, Sorlie T, Eisen MB, et al. Molecular portraits of human breast tumours. Nature 2000;406:747-752) for gene expression analysis. Samples GSM413271-GSM413304: MicroRNA from 17 RCC tumors and 17 corresponding non-tumor samples were hybridized on a single channel platform for miRNA expression analysis.
Experiment type
transcription profiling by array 
Contacts
Kimryn Rathmell <rathmell@med.unc.edu>, A R Brannon, Alexandra Arreola, Anupama Reddy, David Juan, Gabriela Alexe, Gyan Bhanot, Huiqing Liu, Jay Oza, Louis Liou, Michael Seiler, Ming Yao, Shridar Ganesan, W K Rathmell
Citation
Identifying mRNA targets of microRNA dysregulated in cancer: with application to clear cell Renal Cell Carcinoma. Liu H, Brannon AR, Reddy AR, Alexe G, Seiler MW, Arreola A, Oza JH, Yao M, Juan D, Liou LS, Ganesan S, Levine AJ, Rathmell WK, Bhanot GV. , PMID:20420713
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