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E-GEOD-14469 - Transcription profiling of synovial sarcoma-like tumors induced in a genetically engineered mouse model

Status
Submitted on 16 January 2009, released on 24 April 2009, last updated on 10 June 2011
Organism
Mus musculus
Samples (5)
Array (1)
Protocols (5)
Description
Synovial sarcoma-like tumors were generated in mice by conditionally expressing the human t(X;18) translocation-derived SYT-SSX2 fusion protein. Using a Tamoxifen-inducible CreER system, we show here that sporadic expression of SYT-SSX2 across multiple tissue types leads to exclusive formation of synovial sarcoma-like tumors while its widespread expression is lethal. CreER-based sporadic expression both avoids the severe early developmental phenotypes associated with widespread SYT-SSX2 expression and better models natural pathogenesis of cancers where transformed cells usually arise within an environment of largely normal cells. Experiment Overall Design: Genetically engineered mice capable of conditionally expressing the human synovial sarcoma-associated SYT-SSX2 fusion oncogene were mated with genetically engineered mice expressing the CreER fusion protein from ROSA locus. The progenies harboring both CreER and SYT-SSX2 were followed up with or without tamoxifen injection. Tumors were generated in these mice that were dissected out, RNA extracted, and subjected to expression profiling by microarray analysis.
Experiment types
transcription profiling by array, unknown experiment type
Contact
MALAY HALDAR
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-GEOD-14469.idf.txt
Sample and data relationshipE-GEOD-14469.sdrf.txt
Raw data (1)E-GEOD-14469.raw.1.zip
Processed data (1)E-GEOD-14469.processed.1.zip
Array designA-AFFY-45.adf.txt
R ExpressionSetE-GEOD-14469.eSet.r
Links