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PDBsum entry 7b0h

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 7b0h calculated with MOLE 2.0 PDB id
7b0h
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.28 3.44 25.8 -1.86 -0.29 17.2 77 5 0 1 0 4 1 0  DG 8 D DC 9 D
2 1.81 1.84 38.2 -2.86 -0.67 29.7 81 7 1 2 0 1 0 0  DC 9 A
3 3.66 5.25 38.3 -1.72 -0.43 21.1 87 5 1 2 3 0 1 0  DG 10 A DG 10 C DG 8 G
4 2.37 3.32 44.8 -1.88 -0.42 18.5 75 5 2 1 1 2 0 0  DA 5 A DA 6 A DT 7 A DG 8 A DC 7 G DG 8 G DC 9 G
DA 10 G
5 3.69 3.85 45.5 -2.39 -0.52 26.7 84 6 4 1 2 1 0 0  DA 4 A DA 5 A DC 9 G DA 10 G DT 11 G DT 12 G
6 3.42 3.42 54.4 -2.45 -0.54 28.3 84 8 2 1 1 0 0 0  DC 3 C DA 4 C DA 5 C DG 8 D DC 9 D DA 10 D DT 11
D DT 12 D
7 2.59 2.73 66.4 -2.26 -0.33 23.9 82 9 2 2 2 3 1 0  DC 3 C DA 4 C DA 5 C DC 9 D DA 10 D DT 11 D DT 12
D
8 1.21 1.21 81.3 -1.79 -0.52 21.9 80 9 3 1 3 1 0 0  DA -2 C DA -
1 C DC 0 C DG 1 C DG 2 C DC 3 C DA 4 C DT 11 D DT
12 D
9 1.19 1.19 93.3 -1.88 -0.47 23.7 80 9 6 1 3 3 1 0  DA -2 C DA -
1 C DC 0 C DG 1 C DG 2 C DC 3 C DC 7 D DG 8 D DC
9 D DG 8 G
10 1.19 3.53 101.2 -2.46 -0.66 32.1 82 11 6 1 2 1 0 0  DA -
1 A DG 1 A DG 2 A DA 5 A DA 6 A DT 7 A DG 8 A DC
7 G DG 8 G DC 9 G DA 10 G
11 1.29 2.25 147.9 -1.32 -0.27 26.5 75 12 10 1 7 1 1 0  DC 3 C DA 4 C DA 5 C DG 8 D DC 9 D DA 10 D
12 1.15 1.16 172.5 -2.38 -0.50 31.0 78 13 16 2 5 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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