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PDBsum entry 7b0f

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Top Page protein dna_rna ligands pores links
Pore analysis for: 7b0f calculated with MOLE 2.0 PDB id
7b0f
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.84 2.90 42.9 -1.63 -0.59 19.9 89 2 3 1 1 0 0 0  DC 7 B DG 8 B DC 9 B DT 12 B DG 2 C DC 3 C DT 4 C
DA 5 C
2 2.40 2.79 80.1 -1.35 -0.27 26.4 79 7 9 0 5 2 1 0  TTP 801 A DT 12 B
3 2.34 3.29 90.8 -0.72 -0.15 19.6 81 6 5 0 5 2 1 0  DC 7 B DG 8 B DC 9 B DT 12 B DG 2 C DC 3 C DT 4 C
DA 5 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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