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PDBsum entry 7b0f

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Top Page protein dna_rna ligands tunnels links
Tunnel analysis for: 7b0f calculated with MOLE 2.0 PDB id
7b0f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 1.42 21.8 -1.03 -0.30 10.8 84 1 1 1 3 1 0 0  DT 12 B
2 1.36 3.09 22.6 1.45 0.72 5.5 77 2 0 0 8 3 0 0  
3 1.34 1.34 16.9 -0.98 -0.21 17.9 80 3 0 0 1 0 0 0  DG 8 B DC 9 B DA 10 B DG 8 C DC 9 C DG 10 C
4 1.29 1.29 16.9 -1.00 -0.12 19.2 80 3 0 0 1 0 0 0  DG 8 B DC 9 B DA 10 B DT 7 C DG 8 C DC 9 C DG 10 C
5 1.35 1.35 22.4 -1.02 -0.40 15.1 75 4 0 0 1 0 1 0  DC 9 B DA 10 B DG 8 C DC 9 C
6 1.29 1.29 22.5 -1.07 -0.39 15.6 75 4 0 0 1 0 1 0  DC 9 B DA 10 B DT 7 C DG 8 C DC 9 C
7 1.16 1.16 17.0 -0.29 -0.24 10.4 74 2 1 1 1 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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