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PDBsum entry 6vqb

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Top Page protein ligands Protein-protein interface(s) links
Proton transport PDB id
6vqb
Contents
Protein chains
600 a.a.
459 a.a.
109 a.a.
161 a.a.
47 a.a.
232 a.a.
212 a.a.
Ligands
ADP

References listed in PDB file
Key reference
Title Structure of V-Atpase from the mammalian brain.
Authors Y.M.Abbas, D.Wu, S.A.Bueler, C.V.Robinson, J.L.Rubinstein.
Ref. Science, 2020, 367, 1240-1246. [DOI no: 10.1126/science.aaz2924]
PubMed id 32165585
Abstract
In neurons, the loading of neurotransmitters into synaptic vesicles uses energy from proton-pumping vesicular- or vacuolar-type adenosine triphosphatases (V-ATPases). These membrane protein complexes possess numerous subunit isoforms, which complicates their analysis. We isolated homogeneous rat brain V-ATPase through its interaction with SidK, a Legionella pneumophila effector protein. Cryo-electron microscopy allowed the construction of an atomic model, defining the enzyme's ATP:proton ratio as 3:10 and revealing a homolog of yeast subunit f in the membrane region, which we tentatively identify as RNAseK. The c ring encloses the transmembrane anchors for cleaved ATP6AP1/Ac45 and ATP6AP2/PRR, the latter of which is the (pro)renin receptor that, in other contexts, is involved in both Wnt signaling and the renin-angiotensin system that regulates blood pressure. This structure shows how ATP6AP1/Ac45 and ATP6AP2/PRR enable assembly of the enzyme's catalytic and membrane regions.
PROCHECK
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