spacer
spacer

PDBsum entry 6tps
Go to PDB code: 
Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 6tps calculated with MOLE 2.0 PDB id
6tps
Pores calculated on whole structure Pores calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.19 1.33 38.8 -1.31 -0.24 23.1 80 4 5 2 2 3 0 0  
2 1.89 1.89 39.4 -2.10 -0.65 18.3 81 5 3 2 1 1 1 0  
3 1.38 1.45 57.7 -1.99 -0.58 20.3 88 7 4 7 3 0 2 0  
4 1.39 1.54 92.2 -0.35 0.06 13.3 77 5 4 2 8 5 1 0  
5 2.39 4.65 105.1 -2.12 -0.38 26.6 82 13 8 7 7 1 3 0  DA 25 S DA 26 S
6 1.58 2.02 113.9 -1.20 -0.44 15.5 75 8 3 5 6 1 2 0  DA 7 S DA 15 S DA 16 S DT 34 T DT 42 T DT 43 T DT
44 T DT 45 T
7 2.10 2.20 121.9 -2.19 -0.57 24.2 85 11 9 10 6 1 2 0  DA 26 S DA 27 S DT 27 T DT 28 T
8 1.19 2.03 125.6 -1.39 -0.45 17.2 78 10 8 6 4 7 2 0  DA 13 S DA 14 S DA 15 S DA 25 S DA 26 S DT 33 T
DT 34 T DT 35 T DT 37 T DC 38 T DT 39 T
9 2.54 2.66 122.6 -1.34 -0.37 22.8 81 9 8 4 6 2 0 0  DA 25 S DA 26 S
10 1.39 1.45 122.1 -1.69 -0.57 20.6 83 11 10 7 4 3 1 0  DA 10 S DA 11 S DA 12 S DA 13 S DA 14 S DA 15 S
DT 37 T DC 38 T
11 2.45 2.57 128.5 -1.98 -0.44 24.8 78 12 10 5 6 2 3 0  
12 1.88 4.10 133.2 -2.10 -0.43 22.8 80 18 9 8 5 2 5 0  
13 1.40 1.47 143.7 -0.99 -0.62 11.1 81 8 3 4 2 2 0 0  DA 2 S DA 3 S DA 4 S DA 5 S DA 6 S DA 7 S DA 8 S
DA 10 S DA 11 S DA 12 S DA 13 S DA 14 S DA 15 S
DT 37 T DC 38 T DT 48 T DT 49 T DT 50 T DT 51 T
DT 52 T DT 53 T
14 1.15 1.56 147.1 -0.62 -0.28 15.2 85 7 6 8 13 3 1 0  DA 21 S DA 23 S DA 24 S DA 25 S DA 26 S DA 27 S
DT 27 T DT 30 T
15 1.62 1.93 158.6 -1.04 -0.43 15.0 77 10 6 6 9 3 3 0  DA 7 S DA 16 S DA 25 S DA 26 S DT 33 T DT 34 T DT
42 T DT 43 T DT 44 T DT 45 T
16 1.19 1.44 162.4 -2.05 -0.45 23.9 79 18 13 10 5 6 2 0  
17 1.27 1.41 167.4 -1.63 -0.53 23.2 76 10 9 4 4 4 1 0  DA 2 S DA 3 S DA 4 S DA 5 S DA 6 S DA 7 S DA 8 S
DT 49 T DT 50 T DT 51 T DT 52 T DT 53 T
18 2.38 2.48 169.8 -2.25 -0.50 27.6 82 20 12 5 4 1 2 0  
19 1.68 2.55 172.6 -2.15 -0.50 21.5 83 15 8 14 3 5 4 0  DG 1 U DC 12 V
20 1.41 1.53 175.4 -1.39 -0.49 18.8 81 12 12 8 6 6 2 0  DA 10 S DA 11 S DA 12 S DA 13 S DA 14 S DA 15 S D
A 25 S DA 26 S DT 33 T DT 34 T DT 35 T DT 37 T DC
38 T
21 1.38 1.46 197.0 -0.79 -0.49 11.3 79 9 5 5 4 5 1 0  DA 2 S DA 3 S DA 4 S DA 5 S DA 6 S DA 7 S DA 8 S
DA 10 S DA 11 S DA 12 S DA 13 S DA 14 S DA 15 S D
A 25 S DA 26 S DT 33 T DT 34 T DT 35 T DT 37 T DC
38 T DT 48 T DT 49 T DT 50 T DT 51 T DT 52 T DT
53 T
22 1.21 1.54 191.3 -1.04 -0.28 20.8 85 13 11 10 14 2 3 0  
23 1.71 2.55 194.5 -2.06 -0.49 19.9 85 17 7 18 7 6 3 0  DG 1 U DG 2 U DG 3 U DC 10 V
24 1.21 1.53 195.2 -1.01 -0.20 22.3 81 13 12 11 17 4 2 0  
25 1.91 2.11 225.4 -2.03 -0.43 23.8 83 21 9 14 10 1 4 1  
26 1.23 1.49 239.8 -0.83 -0.27 17.6 81 14 9 8 17 2 3 0  DA 2 S DA 3 S DA 4 S DA 5 S DA 6 S DA 7 S DA 8 S
DT 49 T DT 50 T DT 51 T DT 52 T DT 53 T
27 1.26 1.49 244.5 -0.38 -0.14 14.9 81 10 11 12 24 6 3 1  
28 1.18 1.52 266.1 -0.87 -0.36 16.3 83 18 8 10 14 3 1 0  DA 15 S DA 16 S DA 17 S DA 18 S DA 19 S DT 34 T
DT 40 T DT 41 T DT 42 T
29 1.56 1.69 266.1 -2.15 -0.58 26.9 82 21 17 14 8 3 3 0  DA 9 S DA 10 S DA 18 S DA 19 S DT 40 T DT 41 T DT
42 T DT 49 T
30 1.59 1.68 278.6 -1.76 -0.60 21.1 82 17 11 12 6 2 2 0  DA 2 S DA 3 S DA 4 S DA 5 S DA 6 S DA 7 S DA 8 S
DA 9 S DA 10 S DA 18 S DA 19 S DT 40 T DT 41 T DT
42 T DT 49 T DT 50 T DT 51 T DT 52 T DT 53 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer