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PDBsum entry 6pw2

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 6pw2 calculated with MOLE 2.0 PDB id
6pw2
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.29 38.7 -1.04 -0.22 13.7 64 3 0 0 0 2 0 0  DG 23 E DC 24 E DT 25 E DT 26 E DT 41 F DA 42 F
2 1.29 1.29 53.7 -1.10 -0.32 10.2 69 3 0 1 0 2 1 0  DA 16 E DG 17 E DG 23 E DC 24 E DT 25 E DT 26 E
DC 27 E DC 29 E DA 31 F DC 32 F DG 33 F DT 41 F D
A 42 F
3 1.66 1.66 65.2 -0.43 -0.50 5.3 85 2 0 2 1 0 2 0  DC 5 E DA 8 E DA 9 E DT 10 E DT 11 E DC 12 E DG
13 E DA 14 E DT 15 E DA 16 E DG 17 E DT 41 F DA
42 F DT 43 F DA 52 F DT 53 F DT 54 F DA 55 F DG
56 F
4 1.60 2.00 52.4 -0.98 -0.62 6.4 78 2 0 2 1 0 3 0  DA 38 E DT 11 G DC 12 G DG 13 G DA 14 G DT 15 G
DT 46 H DA 47 H DT 48 H DA 52 H DT 53 H DT 54 H
5 1.94 1.94 29.9 -0.41 -0.80 3.3 107 0 0 0 0 0 0 0  DA 55 G DG 56 G DT 7 H DA 8 H DA 9 H DT 10 H DT
11 H DC 12 H
6 1.37 1.49 31.7 -2.10 -0.28 28.5 82 4 2 0 2 1 0 0  
7 1.28 1.48 106.7 -0.82 -0.50 9.4 84 4 2 2 5 0 2 1  DG 30 G DT 31 G DT 32 G DG 33 G DG 34 G DA 30 H D
A 31 H DC 32 H DG 33 H DG 34 H
8 1.68 1.58 107.9 -0.92 -0.53 9.3 83 2 3 2 5 1 2 1  DG 30 G DT 31 G DT 32 G DG 33 G DG 34 G DA 30 H D
A 31 H DC 32 H DG 33 H DG 34 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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