PDBsum entry 6ndh

Tunnel analysis for: 6ndh calculated with

MOLE 2.0

PDB id

6ndh

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.04

1.33

51.7

2.08

0.63

2.6

79

2

2

1

14

5

0

1

2

1.01

1.32

53.3

1.52

0.56

2.2

80

1

2

2

14

5

0

1

3

1.03

1.33

54.2

1.48

0.55

2.4

79

1

2

2

14

5

0

1

4

1.01

1.32

64.1

1.41

0.49

6.7

79

3

4

1

14

5

1

1

5

1.05

1.34

68.5

0.82

0.20

2.8

82

2

1

4

13

7

0

1

6

1.13

3.17

22.2

0.82

0.08

9.1

83

1

1

0

4

1

0

0

7

1.87

1.87

16.7

-0.58

-0.49

2.7

84

0

0

3

1

0

0

1

8

1.13

1.44

15.5

-1.19

-0.58

6.0

73

1

0

2

1

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.