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PDBsum entry 6n4y

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protein ligands Protein-protein interface(s) links
Membrane protein PDB id
6n4y

 

 

 

 

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Contents
Protein chains
507 a.a.
480 a.a.
123 a.a.
Ligands
NAG-NAG-FUC
NAG-NAG-BMA-MAN-
MAN-FUC-FUC
NAG-NAG-BMA-MAN-
FUC
NAG-NAG-BMA-MAN-
FUC-FUC
NAG ×4
PDB id:
6n4y
Name: Membrane protein
Title: Metabotropic glutamate receptor 5 extracellular domain with nb43
Structure: Metabotropic glutamate receptor 5. Chain: a, b, c, d. Synonym: mglur5. Engineered: yes. Nanobody 43. Chain: e, f, g, h. Engineered: yes. Other_details: nanobody 43
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: grm5, gprc1e, mglur5. Expressed in: trichoplusia ni. Expression_system_taxid: 7111. Expression_system_cell_line: high five. Lama glama. Organism_taxid: 9844.
Resolution:
3.26Å     R-factor:   0.201     R-free:   0.251
Authors: A.Koehl,H.Hu,D.Feng,B.Sun,M.Chu,W.I.Weis,J.M.Mathiesen,G.Skiniotis, B.K.Kobilka
Key ref: A.Koehl et al. (2019). Structural insights into the activation of metabotropic glutamate receptors. Nature, 566, 79-84. PubMed id: 30675062 DOI: 10.1038/s41586-019-0881-4
Date:
20-Nov-18     Release date:   23-Jan-19    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
P41594  (GRM5_HUMAN) -  Metabotropic glutamate receptor 5 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1212 a.a.
507 a.a.
Protein chain
Pfam   ArchSchema ?
P41594  (GRM5_HUMAN) -  Metabotropic glutamate receptor 5 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1212 a.a.
480 a.a.
Protein chains
No UniProt id for this chain
Struc: 123 a.a.
Key:    PfamA domain  Secondary structure

 

 
DOI no: 10.1038/s41586-019-0881-4 Nature 566:79-84 (2019)
PubMed id: 30675062  
 
 
Structural insights into the activation of metabotropic glutamate receptors.
A.Koehl, H.Hu, D.Feng, B.Sun, Y.Zhang, M.J.Robertson, M.Chu, T.S.Kobilka, T.Laermans, J.Steyaert, J.Tarrasch, S.Dutta, R.Fonseca, W.I.Weis, J.M.Mathiesen, G.Skiniotis, B.K.Kobilka.
 
  ABSTRACT  
 
Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains-the 7-transmembrane domains-in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.
 

 

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